PESCADOR

Platform for Exploration of Significant Concepts AssociateD to co-Occurrences Relationships.

Input | Concepts | Retrieval | Development | Help

         
  Resurrected!

INPUT [Required]

Retrieve PMIDs that match a PubMed query, paste below you query:


OR

Choose a PubMed ID list file to upload:

OR

Paste below your list of PMIDs (one per line!):

The list of PMIDs can also be obtained by a query to MedlineRanker
(see button "Send All" int the "Send results to Pescador co-occurence analysis tool"
section in its output page) or XplorMed (see button "Send to PESCADOR" in its output page).

Examples:
Alzheimer's and Parkinson's diseases in Human;
Colorectal cancer case study.

Other examples of PMIDs lists related to:
Phosphorylation in Yeast
Host-Pathogen Interactions in Arabidopsis thaliana
Cell Cycle in Escherichia coli

Clear   

Target Species

Inform below the NCBI's Taxonomy ID for the species in which you want to set the gene/protein dictionaries

Examples: 9606 (H. sapiens), 3702 (A. thaliana), 10090 (M. musculus), 39947 (O. sativa subsp. japonica).

Go to Submit

 
CONCEPTS [Optional]
 
Use MeSH terms as concepts to search your Pubmed collection

Use all MeSH terms in your analysis

OR

Select below the MeSH sub-categories to limit your search
Anatomy
Body Regions
Musculoskeletal System
Digestive System
Respiratory System
Urogenital System
Endocrine System
Cardiovascular System
Nervous System
Sense Organs
Tissues
Cells
Fluids and Secretions
Animal Structures
Stomatognathic System
Hemic and Immune Systems
Embryonic Structures
Integumentary System

Organisms
Animals
Algae
Bacteria
Viruses
Fungi
Plants
Archaea
Mesomycetozoea
Diseases
Bacterial Infections and Mycoses
Virus Diseases
Parasitic Diseases
Neoplasms
Musculoskeletal Diseases
Digestive System Diseases
Stomatognathic Diseases
Respiratory Tract Diseases
Otorhinolaryngologic Diseases
Nervous System Diseases
Eye Diseases
Male Urogenital Diseases
Female Urogenital Diseases and Pregnancy Complications
Cardiovascular Diseases
Hemic and Lymphatic Diseases
Congenital, Hereditary, and Neonatal Diseases and Abnormalities
Skin and Connective Tissue Diseases
Nutritional and Metabolic Diseases
Endocrine System Diseases
Immune System Diseases
Disorders of Environmental Origin
Animal Diseases
Pathological Conditions, Signs and Symptoms

Chemicals and Drugs
Inorganic Chemicals
Organic Chemicals
Heterocyclic Compounds
Polycyclic Compounds
Macromolecular Substances
Hormones, Hormone Substitutes, and Hormone Antagonists
Enzymes and Coenzymes
Carbohydrates
Lipids
Amino Acids, Peptides, and Proteins
Nucleic Acids, Nucleotides, and Nucleosides
Complex Mixtures
Biological Factors
Biomedical and Dental Materials
Pharmaceutical Preparations
Chemical Actions and Uses
Analytical,Diagnostic and Therapeutic Techniques and Equipment
Diagnosis
Therapeutics
Anesthesia and Analgesia
Surgical Procedures, Operative
Investigative Techniques
Dentistry
Equipment and Supplies

Psychiatry and Psychology
Behavior and Behavior Mechanisms
Psychological Phenomena and Processes
Mental Disorders
Behavioral Disciplines and Activities

Phenomena and Processe
Physical Phenomena
Chemical Phenomena
Metabolic Phenomena
Cell Physiological Phenomena
Genetic Phenomena
Microbiological Phenomena
Physiological Phenomena
Reproductive and Urinary Physiological Phenomena
Circulatory and Respiratory Physiological Phenomena
Digestive System and Oral Physiological Phenomena
Musculoskeletal and Neural Physiological Phenomena
Immune System Phenomena
Integumentary System Physiological Phenomena
Ocular Physiological Phenomena
Plant Physiological Phenomena
Biological Phenomena
Mathematical Concepts

Disciplines and Occupations
Natural Science Disciplines
Health Occupations

Anthropology,Education,Sociology and Social Phenomena
Social Sciences
Education
Human Activities
Technology,Industry,Agriculture
Technology, Industry, and Agriculture
Food and Beverages

Humanities
Humanities

Information Science
Information Science

Named Groups
Persons

Health Care
Population Characteristics
Health Care Facilities, Manpower, and Services
Health Care Economics and Organizations
Health Services Administration
Health Care Quality, Access, and Evaluation
Environment and Public Health

Publication Characteristics
Publication Components
Publication Formats
Study Characteristics
Support of Research

Geographicals
Geographic Locations

PLUS

Customized concepts

Load below the biological concepts to be checked for (one per line!)

Example   Clear

 
RETRIEVAL

Load a previously analysed project:

 
DEVELOPMENT

Adriano Barbosa-Silva(1*), Jean-Fred Fontaine(1), Elisa R. Donnard(2), Fernanda Stussi(2), J. Miguel Ortega(2) and Miguel A. Andrade-Navarro(1)

(1)Computational Biology and Data Mining Group
Max-Delbrueck Center For Molecular Medicine
Berlin - Germany
* Now at Luxembourg Centre for Systems Biomedicine - University of Luxembourg

(2)Biodados Laboratory
Federal University of Minas Gerais
Minas Gerais - Brazil

REFERENCE: PESCADOR, a web-based tool to assist text-mining of biointeractions extracted from PubMed queries. BMC Bioinformatics. 2011 Nov 9;12(1):435