Tools
HIPPIE: Study and filter the network of human protein-protein interaction data. Schaefer et al., 2012.
PESCADOR: Extract and analyse a network of gene and protein interactions from a set of Medline abstracts. Barbosa-Silva et al., 2011.
PDBpaint: A visualization webservice to tag protein structures with sequence annotations. Fournier and Andrade-Navarro, 2011.
QiSampler: evaluate alternative scoring schemes for list of items (e.g. genes) based on a very small set of positives. Fontaine et al., 2011.
Génie: ranking all the genes of your favorite species for any topic in a few seconds using orthology information. Fontaine et al., 2011.
MLTrends: Graphs word and term usage trends in the Medline database of biomedical abstracts. Palidwor and Andrade-Navarro, 2010
MedlineRanker: flexible ranking of the biomedical literature in practical time. This tool allows searching the Medline database or filter a large set of abstracts for a given topic. Fontaine et al., 2009
Genes2Diseases: predict genes associated to inherited disease. Tremblay et al., 2008
pSILAC: database of proteomics measurements under the influence of various miRNAs. Selbach et al., 2008
Transcriptome Sailor: examine a genomic region in mouse or human for 3' transcript ends according to EST evidence. Muro et al., 2008
K2D2: predict protein secondary structure content from circular dichroism spectra. Perez-Iratxeta and Andrade-Navarro, 2008
Marker Server: discover marker genes in sets of gene expression data. Currently you can examine a set of 80+ murine stem cell related samples. Krzyzanowski and Andrade-Navarro, 2007
BiasViz: represent amino acid bias in protein sequences from an alignment. Huska et al., 2007
StemBase: explore a database of gene expression data from stem cell samples. Porter et al., 2007
PhyloView: colour a phylogenetic tree according to taxonomy. Palidwor et al., 2006
Probe2GO: obtain extended GO annotations for Affymetrix probe sets. Muro et al., 2006
XplorMed: analyse the results of a query in MEDLINE. Perez-Iratxeta et al., 2003
